miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|305423000|gb|FR621350.1|FR621350 GTTGGAATTTGTGTGGTGGAAATTGCGATTCCGATTTCGGGCGAAGAAGCGTTGTCGGTGGTTCGGATGCGAAGCGGGTT
TTGATCGGAGCTGGGGCTCGTGCGCTATTCTACCCAACTTTGCTATACAATGTTGTTAGGAATAAGATTCAGGCTGAGTT
TCGGTGGTGGGATAAGGTCGATCAGTTTATACTGCTAGGCGCTGTTCCATTCCCTAGTGATGTTCCCCGCCTAAAGGAGC
TTGGTGTTTGTGGAGTAGTCACACTAAATGAGCCCTATGAGACTTTGGTTCCAACGTCTCTATATTATGCTCATGGCGTT
GACCATCTGGTGATACCAACAAGAGACTACTGCTTTGCCCCATCACTGAATGATATAGGCCATGCTGTAGACTTCATACA
TGAAAATGCATCTTGTGGAAGAACTACATACGTTCACTGCAAAGCTGGACGGGGGCGCAGCACTACTGTTGTAATCTGTT
ACCTGGTGCAACACAAGCAGATGACACCTGATGCTGCATATGAGTATGTGAGATCAATTCGGCCGAGGGTGCTTTTAGCC
TCCTCCCAGCGGCAGGCTGTCTGGGAATACTACCATCTTATGGTGAAAAAAGCTTTTATCTAC




Most similar to sp|P0C089|PTPM1_RAT

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P0C089|PTPM1_RAT Protein-tyrosine phosphatase mitochondrial 1
          Length = 193

 Score =  115 bits (288), Expect = 2e-25
 Identities = 70/179 (39%), Positives = 102/179 (56%), Gaps = 6/179 (3%)
 Frame = +3

Query: 96  ARALFYPTLLYNVVRNKI--QAEFRWWDKVDQFILLGAVPFPSDVPRLK-ELGVCGVVTL 266
           AR LFYPTLLY V R ++   A   W+ ++D  +LLGA+P  S   RL  +  V GV+T+
Sbjct: 12  ARVLFYPTLLYTVFRGRVGGPAHRDWYHRIDHTVLLGALPLRSMTRRLVLDENVRGVITM 71

Query: 267 NEPYET--LVPTSLYYAH-GVDHLVIPTRDYCFAPSLNDIGHAVDFIHENASCGRTTYVH 437
           NE YET  L  TS  + + GV+ L + T D    P+L ++   V F  +  S G+  YVH
Sbjct: 72  NEEYETRFLCNTSKEWKNVGVEQLRLSTVDMTGVPTLANLHRGVQFALKYQSLGQCVYVH 131

Query: 438 CKAGRGRSTTVVICYLVQHKQMTPDAAYEYVRSIRPRVLLASSQRQAVWEYYHLMVKKA 614
           CKAGR RS T+V  YL+Q    +P+ A E +  IR  + +  SQ + + E++  +  +A
Sbjct: 132 CKAGRSRSATMVAAYLIQVHNWSPEEAIEAIAKIRSHISIRPSQLEILKEFHKEIAARA 190